Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs116463976 chr5:179484519 G/C 1.35E-5 176 24.23 32.15 25.17 KM Plot
PCPG rs11646448 chr16:89966357 A/T 0.000139 178 25.87 20.37 36.37 KM Plot
PCPG rs11646697 chr16:90132819 C/A 7.68E-9 177 25.87 20.13 6.62 KM Plot
PCPG rs11646766 chr16:89838578 A/T 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11646864 chr16:85226819 A/G 1.76E-7 171 25.92 23.43 17.43 KM Plot
PCPG rs11647027 chr16:90074213 A/C 7.45E-9 177 25.77 20.37 6.62 KM Plot
PCPG rs11647174 chr16:89958538 G/A 0.000167 176 25.87 20.28 36.37 KM Plot
PCPG rs11648039 chr16:90133581 C/T 8.72E-9 176 25.87 20.17 6.62 KM Plot
PCPG rs11648433 chr16:89965055 G/A 0.000167 175 25.87 20.28 36.37 KM Plot
PCPG rs11648552 chr16:89891911 T/G 0.000198 172 26.22 20.28 36.37 KM Plot
PCPG rs11648689 chr16:89806732 G/A 0.000188 175 25.87 20.2 36.37 KM Plot
PCPG rs11648818 chr16:90049323 G/A 1.11E-8 172 25.87 20.2 6.62 KM Plot
PCPG rs11648879 chr16:89827755 A/G 0.000193 175 25.87 20.17 36.37 KM Plot
PCPG rs11648881 chr16:89862434 T/C 0.000179 174 25.87 21.5 36.37 KM Plot
PCPG rs11649100 chr16:89798179 A/G 0.00018 175 25.87 20.28 36.37 KM Plot